If a (newick) phylogenetic tree file has been provided, the visualisation of the MSA used in the calculations is shown below. The two chosen groups (i.e. ‘ingroup’ / species of interest, and outgroup) are highlighted in the tree. The outgroup, used in the computation or not, is the outgroup, which together with the reference species of interest coalesce at the node of interest, from which the ancestral sequence have been extracted. Most recent common ancestor (MRCA) is highlighted in purple and labeled. The rest of the clades in the alignment are shown in lighter grey. Regardless whether a reconstructed ancestral sequence at a node, or an outgroup, has been chosen as the ancestor, the MRCA will be highlighted.
If an ideogram (often possible to download on the UCSC website, here) has been provided, the distribution of simulated variants is shown across the genome of the species of interest. The grey distribution corresponds to the total amount of simulated variants, whereas the red distribution corresponds to the subset that is overlapping with a corresponding non-gap ancestral sequence. If there is no forced sub-sampling due to lack of ancestral sequence, the distribution will be fully red.
If an ideogram (often possible to download on the UCSC website, here) has been provided, the distribution of derived variants is shown across the genome of the species of interest. The distribution of derived variants across the genome is shown in red.
| Size of ref. genome | Size of reconstructed genome | Fraction covered of ref. genome | |
|---|---|---|---|
| 1 | 274 330 532 | 8 395 463 | 0.03 |
| 2 | 151 935 994 | 4 459 500 | 0.03 |
| 3 | 132 848 913 | 3 026 343 | 0.02 |
| 4 | 130 910 915 | 3 139 200 | 0.02 |
| 5 | 104 526 007 | 2 995 239 | 0.03 |
| 6 | 170 843 587 | 4 958 670 | 0.03 |
| 7 | 121 844 099 | 3 627 371 | 0.03 |
| 8 | 138 966 237 | 3 315 331 | 0.02 |
| 9 | 139 512 083 | 3 270 732 | 0.02 |
| 10 | 69 359 453 | 1 517 623 | 0.02 |
| 11 | 79 169 978 | 1 469 943 | 0.02 |
| 12 | 61 602 749 | 1 610 485 | 0.03 |
| 13 | 208 334 590 | 4 843 221 | 0.02 |
| 14 | 141 755 446 | 3 198 729 | 0.02 |
| 15 | 140 412 725 | 4 230 279 | 0.03 |
| 16 | 79 944 280 | 2 075 088 | 0.03 |
| 17 | 63 494 081 | 389 760 | 0.01 |
| 18 | 55 982 971 | 1 501 038 | 0.03 |
| X | 125 939 595 | 2 366 104 | 0.02 |
| No of sim. SNPs | Number of sim. SNPs overlapping ancestral seq. | Fraction of sim. SNPs overlapping ancestral seq. | Number of derived variants | |
|---|---|---|---|---|
| 1 | 5 336 533 | 158 777 | 0.03 | 745 809 |
| 2 | 3 394 760 | 92 008 | 0.03 | 402 492 |
| 3 | 3 297 836 | 71 347 | 0.02 | 276 362 |
| 4 | 2 710 976 | 61 416 | 0.02 | 283 498 |
| 5 | 2 471 596 | 62 692 | 0.03 | 272 869 |
| 6 | 4 517 531 | 121 912 | 0.03 | 450 167 |
| 7 | 2 959 794 | 81 966 | 0.03 | 331 156 |
| 8 | 2 720 497 | 64 783 | 0.02 | 310 898 |
| 9 | 2 954 866 | 71 621 | 0.02 | 312 190 |
| 10 | 1 835 451 | 39 035 | 0.02 | 151 570 |
| 11 | 1 718 164 | 29 230 | 0.02 | 139 328 |
| 12 | 1 869 374 | 46 141 | 0.02 | 147 674 |
| 13 | 3 602 961 | 83 091 | 0.02 | 436 988 |
| 14 | 3 037 502 | 67 347 | 0.02 | 289 773 |
| 15 | 2 601 216 | 70 689 | 0.03 | 360 678 |
| 16 | 1 647 121 | 42 080 | 0.03 | 193 592 |
| 17 | 1 446 947 | 7 681 | 0.01 | 36 282 |
| 18 | 1 486 807 | 36 714 | 0.02 | 142 273 |
| X | 2 143 456 | 38 490 | 0.02 | 211 147 |
| No. of SNPs | Fraction transitions | Fraction transversions | Fraction CpGs | Fraction non-CpGs (1-CpGs) | |
|---|---|---|---|---|---|
| 1 | 158 777 | 0.23 | 0.15 | 0.62 | 0.38 |
| 2 | 92 008 | 0.21 | 0.14 | 0.65 | 0.35 |
| 3 | 71 347 | 0.15 | 0.10 | 0.76 | 0.24 |
| 4 | 61 416 | 0.18 | 0.12 | 0.70 | 0.30 |
| 5 | 62 692 | 0.20 | 0.13 | 0.66 | 0.34 |
| 6 | 121 912 | 0.18 | 0.11 | 0.71 | 0.29 |
| 7 | 81 966 | 0.20 | 0.13 | 0.67 | 0.33 |
| 8 | 64 783 | 0.19 | 0.13 | 0.68 | 0.32 |
| 9 | 71 621 | 0.17 | 0.11 | 0.72 | 0.28 |
| 10 | 39 035 | 0.15 | 0.10 | 0.76 | 0.24 |
| 11 | 29 230 | 0.15 | 0.09 | 0.76 | 0.24 |
| 12 | 46 141 | 0.14 | 0.09 | 0.77 | 0.23 |
| 13 | 83 091 | 0.20 | 0.13 | 0.67 | 0.33 |
| 14 | 67 347 | 0.16 | 0.11 | 0.73 | 0.27 |
| 15 | 70 689 | 0.25 | 0.16 | 0.59 | 0.41 |
| 16 | 42 080 | 0.20 | 0.14 | 0.66 | 0.34 |
| 17 | 7 681 | 0.05 | 0.03 | 0.92 | 0.08 |
| 18 | 36 714 | 0.18 | 0.11 | 0.71 | 0.29 |
| X | 38 490 | 0.16 | 0.11 | 0.73 | 0.27 |
##### Table with corresponding data:
| No. of SNPs | Fraction transitions | Fraction transversions | |
|---|---|---|---|
| 1 | 745 809 | 0.61 | 0.39 |
| 2 | 402 492 | 0.61 | 0.39 |
| 3 | 276 362 | 0.61 | 0.39 |
| 4 | 283 498 | 0.61 | 0.39 |
| 5 | 272 869 | 0.61 | 0.39 |
| 6 | 450 167 | 0.61 | 0.39 |
| 7 | 331 156 | 0.61 | 0.39 |
| 8 | 310 898 | 0.60 | 0.40 |
| 9 | 312 190 | 0.60 | 0.40 |
| 10 | 151 570 | 0.58 | 0.42 |
| 11 | 139 328 | 0.59 | 0.41 |
| 12 | 147 674 | 0.60 | 0.40 |
| 13 | 436 988 | 0.62 | 0.38 |
| 14 | 289 773 | 0.61 | 0.39 |
| 15 | 360 678 | 0.62 | 0.38 |
| 16 | 193 592 | 0.60 | 0.40 |
| 17 | 36 282 | 0.60 | 0.40 |
| 18 | 142 273 | 0.60 | 0.40 |
| X | 211 147 | 0.61 | 0.39 |
Number of mutations, fractions, and substitution rates. To make sure the simulation was performed as expected, the leftmost part is the calculated numbers and rates in the parameter files, including the total number of simulated variants per chromosome, based on information from the ancestor and reference species. The middle part is the (re)calculated numbers and rates based on the total number of simulated variants. The rightmost part is the (re)calculated numbers and rates within the subset with a corresponding non-gap ancestral sequence. The comparison of parameters and simulated variants is to make sure that the simulation has been perform as intended, and the comparison between total set and the subset is to make sure that the distribution is the same even if the variants are forced to be down-sampled due to the lack of an available ancestral sequence.
|
Parameter files
|
Simulated variant file
|
Simulated variant file
(filtered for positions with a corresponding non-gap ancestral position) |
||||||
|---|---|---|---|---|---|---|---|---|
| Chromosome considered: 1 | Chromosome considered: 1 | Chromosome considered: 1 | ||||||
| Total mut: 1042319 | Total mut: 2001782 | Total mut: 60924 | ||||||
| #AC | AG | AT | #AC | AG | AT | #AC | AG | AT |
| 73989 | 176788 | 66263 | 151531 | 343657 | 116514 | 4682 | 10490 | 3467 |
| 7.10% | 16.96% | 6.36% | 7.57% | 17.17% | 5.82% | 7.68% | 17.22% | 5.69% |
| #CA | CG | CT | #CA | CG | CT | #CA | CG | CT |
| 34322 | 30100 | 139544 | 63740 | 63387 | 261108 | 1973 | 1909 | 7872 |
| 3.29% | 2.89% | 13.39% | 3.18% | 3.17% | 13.04% | 3.24% | 3.13% | 12.92% |
| #GA | GC | GT | #GA | GC | GT | #GA | GC | GT |
| 140235 | 30148 | 34438 | 261581 | 63669 | 64082 | 7939 | 1894 | 1990 |
| 13.45% | 2.89% | 3.30% | 13.07% | 3.18% | 3.20% | 13.03% | 3.11% | 3.27% |
| #TA | TC | TG | #TA | TC | TG | #TA | TC | TG |
| 66150 | 176739 | 73603 | 116313 | 344128 | 152072 | 3546 | 10608 | 4554 |
| 6.35% | 16.96% | 7.06% | 5.81% | 17.19% | 7.60% | 5.82% | 17.41% | 7.47% |
| Total CpG mut: 123877 | Total CpG mut: 3334751 | Total CpG mut: 97853 | ||||||
| #CA | CG | CT (CpG) | #CA | CG | CT (CpG) | #CA | CG | CT (CpG) |
| 11412 | 9879 | 40533 | 301314 | 289766 | 1077534 | 8922 | 8369 | 31763 |
| 9.21% | 7.97% | 32.72% | 9.04% | 8.69% | 32.31% | 9.12% | 8.55% | 32.46% |
| #GA | GC | GT (CpG) | #GA | GC | GT (CpG) | #GA | GC | GT (CpG) |
| 40736 | 9825 | 11492 | 1072933 | 289782 | 303422 | 31248 | 8543 | 9008 |
| 32.88% | 7.93% | 9.28% | 32.17% | 8.69% | 9.10% | 31.93% | 8.73% | 9.21% |
| Chromosome considered: 2 | Chromosome considered: 2 | Chromosome considered: 2 | ||||||
| Total mut: 573466 | Total mut: 3093377 | Total mut: 92757 | ||||||
| #AC | AG | AT | #AC | AG | AT | #AC | AG | AT |
| 45175 | 100977 | 33035 | 231091 | 524544 | 178071 | 7055 | 16017 | 5267 |
| 7.88% | 17.61% | 5.76% | 7.47% | 16.96% | 5.76% | 7.61% | 17.27% | 5.68% |
| #CA | CG | CT | #CA | CG | CT | #CA | CG | CT |
| 17157 | 18435 | 71360 | 100114 | 99669 | 411577 | 2962 | 2969 | 12046 |
| 2.99% | 3.21% | 12.44% | 3.24% | 3.22% | 13.31% | 3.19% | 3.20% | 12.99% |
| #GA | GC | GT | #GA | GC | GT | #GA | GC | GT |
| 72234 | 18515 | 17306 | 411713 | 99737 | 100718 | 12040 | 2934 | 3025 |
| 12.60% | 3.23% | 3.02% | 13.31% | 3.22% | 3.26% | 12.98% | 3.16% | 3.26% |
| #TA | TC | TG | #TA | TC | TG | #TA | TC | TG |
| 32986 | 100919 | 45367 | 177677 | 525613 | 232853 | 5339 | 16103 | 7000 |
| 5.75% | 17.60% | 7.91% | 5.74% | 16.99% | 7.53% | 5.76% | 17.36% | 7.55% |
| Total CpG mut: 67881 | Total CpG mut: 5637916 | Total CpG mut: 158028 | ||||||
| #CA | CG | CT (CpG) | #CA | CG | CT (CpG) | #CA | CG | CT (CpG) |
| 5965 | 6250 | 21806 | 508496 | 490719 | 1821642 | 14294 | 13606 | 51146 |
| 8.79% | 9.21% | 32.12% | 9.02% | 8.70% | 32.31% | 9.05% | 8.61% | 32.37% |
| #GA | GC | GT (CpG) | #GA | GC | GT (CpG) | #GA | GC | GT (CpG) |
| 21914 | 6041 | 5905 | 1813805 | 490823 | 512431 | 50790 | 13805 | 14387 |
| 32.28% | 8.90% | 8.70% | 32.17% | 8.71% | 9.09% | 32.14% | 8.74% | 9.10% |
| Chromosome considered: 3 | Chromosome considered: 3 | Chromosome considered: 3 | ||||||
| Total mut: 400090 | Total mut: 3851738 | Total mut: 110071 | ||||||
| #AC | AG | AT | #AC | AG | AT | #AC | AG | AT |
| 32474 | 72448 | 22497 | 284974 | 647769 | 219788 | 8300 | 18793 | 6145 |
| 8.12% | 18.11% | 5.62% | 7.40% | 16.82% | 5.71% | 7.54% | 17.07% | 5.58% |
| #CA | CG | CT | #CA | CG | CT | #CA | CG | CT |
| 11511 | 12906 | 48310 | 126392 | 125774 | 519380 | 3563 | 3580 | 14513 |
| 2.88% | 3.23% | 12.07% | 3.28% | 3.27% | 13.48% | 3.24% | 3.25% | 13.19% |
| #GA | GC | GT | #GA | GC | GT | #GA | GC | GT |
| 47587 | 12973 | 11595 | 519834 | 125769 | 126884 | 14488 | 3505 | 3605 |
| 11.89% | 3.24% | 2.90% | 13.50% | 3.27% | 3.29% | 13.16% | 3.18% | 3.28% |
| #TA | TC | TG | #TA | TC | TG | #TA | TC | TG |
| 22621 | 72255 | 32913 | 219271 | 648408 | 287495 | 6337 | 18936 | 8306 |
| 5.65% | 18.06% | 8.23% | 5.69% | 16.83% | 7.46% | 5.76% | 17.20% | 7.55% |
| Total CpG mut: 48526 | Total CpG mut: 8177391 | Total CpG mut: 212061 | ||||||
| #CA | CG | CT (CpG) | #CA | CG | CT (CpG) | #CA | CG | CT (CpG) |
| 4337 | 4588 | 15422 | 737211 | 711314 | 2641591 | 19121 | 18422 | 68506 |
| 8.94% | 9.45% | 31.78% | 9.02% | 8.70% | 32.30% | 9.02% | 8.69% | 32.30% |
| #GA | GC | GT (CpG) | #GA | GC | GT (CpG) | #GA | GC | GT (CpG) |
| 15283 | 4595 | 4301 | 2631762 | 712138 | 743375 | 68240 | 18509 | 19263 |
| 31.49% | 9.47% | 8.86% | 32.18% | 8.71% | 9.09% | 32.18% | 8.73% | 9.08% |
| Chromosome considered: 4 | Chromosome considered: 4 | Chromosome considered: 4 | ||||||
| Total mut: 407019 | Total mut: 4627671 | Total mut: 128673 | ||||||
| #AC | AG | AT | #AC | AG | AT | #AC | AG | AT |
| 34131 | 75190 | 23566 | 342893 | 778133 | 264071 | 9698 | 21915 | 7219 |
| 8.39% | 18.47% | 5.79% | 7.41% | 16.81% | 5.71% | 7.54% | 17.03% | 5.61% |
| #CA | CG | CT | #CA | CG | CT | #CA | CG | CT |
| 11332 | 11944 | 48309 | 151739 | 151298 | 623668 | 4137 | 4163 | 17054 |
| 2.78% | 2.93% | 11.87% | 3.28% | 3.27% | 13.48% | 3.22% | 3.24% | 13.25% |
| #GA | GC | GT | #GA | GC | GT | #GA | GC | GT |
| 47731 | 11988 | 11198 | 624537 | 151152 | 152386 | 16924 | 4108 | 4220 |
| 11.73% | 2.95% | 2.75% | 13.50% | 3.27% | 3.29% | 13.15% | 3.19% | 3.28% |
| #TA | TC | TG | #TA | TC | TG | #TA | TC | TG |
| 23441 | 74459 | 33730 | 263392 | 778988 | 345414 | 7441 | 22080 | 9714 |
| 5.76% | 18.29% | 8.29% | 5.69% | 16.83% | 7.46% | 5.78% | 17.16% | 7.55% |
| Total CpG mut: 41951 | Total CpG mut: 10112434 | Total CpG mut: 254875 | ||||||
| #CA | CG | CT (CpG) | #CA | CG | CT (CpG) | #CA | CG | CT (CpG) |
| 3825 | 3644 | 13407 | 911461 | 879093 | 3267118 | 22967 | 22069 | 82469 |
| 9.12% | 8.69% | 31.96% | 9.01% | 8.69% | 32.31% | 9.01% | 8.66% | 32.36% |
| #GA | GC | GT (CpG) | #GA | GC | GT (CpG) | #GA | GC | GT (CpG) |
| 13535 | 3720 | 3820 | 3254930 | 880034 | 919798 | 81982 | 22201 | 23187 |
| 32.26% | 8.87% | 9.11% | 32.19% | 8.70% | 9.10% | 32.17% | 8.71% | 9.10% |
| Chromosome considered: 5 | Chromosome considered: 5 | Chromosome considered: 5 | ||||||
| Total mut: 385823 | Total mut: 5361195 | Total mut: 149711 | ||||||
| #AC | AG | AT | #AC | AG | AT | #AC | AG | AT |
| 30998 | 69425 | 22975 | 396365 | 899893 | 305514 | 11237 | 25378 | 8405 |
| 8.03% | 17.99% | 5.95% | 7.39% | 16.79% | 5.70% | 7.51% | 16.95% | 5.61% |
| #CA | CG | CT | #CA | CG | CT | #CA | CG | CT |
| 11255 | 11291 | 48050 | 176021 | 175645 | 724422 | 4812 | 4832 | 19974 |
| 2.92% | 2.93% | 12.45% | 3.28% | 3.28% | 13.51% | 3.21% | 3.23% | 13.34% |
| #GA | GC | GT | #GA | GC | GT | #GA | GC | GT |
| 47917 | 11093 | 11556 | 724914 | 175279 | 176890 | 19828 | 4807 | 4931 |
| 12.42% | 2.88% | 3.00% | 13.52% | 3.27% | 3.30% | 13.24% | 3.21% | 3.29% |
| #TA | TC | TG | #TA | TC | TG | #TA | TC | TG |
| 22828 | 67566 | 30869 | 304836 | 901360 | 400056 | 8643 | 25591 | 11273 |
| 5.92% | 17.51% | 8.00% | 5.69% | 16.81% | 7.46% | 5.77% | 17.09% | 7.53% |
| Total CpG mut: 40249 | Total CpG mut: 11850506 | Total CpG mut: 296529 | ||||||
| #CA | CG | CT (CpG) | #CA | CG | CT (CpG) | #CA | CG | CT (CpG) |
| 3684 | 3294 | 13044 | 1068675 | 1029701 | 3828347 | 26776 | 25659 | 95959 |
| 9.15% | 8.18% | 32.41% | 9.02% | 8.69% | 32.31% | 9.03% | 8.65% | 32.36% |
| #GA | GC | GT (CpG) | #GA | GC | GT (CpG) | #GA | GC | GT (CpG) |
| 13074 | 3371 | 3782 | 3813747 | 1032131 | 1077905 | 95331 | 25802 | 27002 |
| 32.48% | 8.38% | 9.40% | 32.18% | 8.71% | 9.10% | 32.15% | 8.70% | 9.11% |
| Chromosome considered: 6 | Chromosome considered: 6 | Chromosome considered: 6 | ||||||
| Total mut: 641932 | Total mut: 6576002 | Total mut: 184981 | ||||||
| #AC | AG | AT | #AC | AG | AT | #AC | AG | AT |
| 51837 | 115009 | 35822 | 482097 | 1094731 | 371686 | 13753 | 31143 | 10370 |
| 8.08% | 17.92% | 5.58% | 7.33% | 16.65% | 5.65% | 7.43% | 16.84% | 5.61% |
| #CA | CG | CT | #CA | CG | CT | #CA | CG | CT |
| 18679 | 20448 | 79009 | 218825 | 217807 | 899582 | 6011 | 6038 | 25058 |
| 2.91% | 3.19% | 12.31% | 3.33% | 3.31% | 13.68% | 3.25% | 3.26% | 13.55% |
| #GA | GC | GT | #GA | GC | GT | #GA | GC | GT |
| 78630 | 20524 | 18576 | 899995 | 217807 | 219726 | 24763 | 5979 | 6204 |
| 12.25% | 3.20% | 2.89% | 13.69% | 3.31% | 3.34% | 13.39% | 3.23% | 3.35% |
| #TA | TC | TG | #TA | TC | TG | #TA | TC | TG |
| 36198 | 115067 | 52133 | 370836 | 1096385 | 486525 | 10456 | 31380 | 13826 |
| 5.64% | 17.93% | 8.12% | 5.64% | 16.67% | 7.40% | 5.65% | 16.96% | 7.47% |
| Total CpG mut: 79251 | Total CpG mut: 15153230 | Total CpG mut: 383171 | ||||||
| #CA | CG | CT (CpG) | #CA | CG | CT (CpG) | #CA | CG | CT (CpG) |
| 6852 | 7270 | 25672 | 1366707 | 1317114 | 4894604 | 34574 | 33138 | 124010 |
| 8.65% | 9.17% | 32.39% | 9.02% | 8.69% | 32.30% | 9.02% | 8.65% | 32.36% |
| #GA | GC | GT (CpG) | #GA | GC | GT (CpG) | #GA | GC | GT (CpG) |
| 25279 | 7214 | 6964 | 4876706 | 1320745 | 1377354 | 123286 | 33286 | 34877 |
| 31.90% | 9.10% | 8.79% | 32.18% | 8.72% | 9.09% | 32.18% | 8.69% | 9.10% |
| Chromosome considered: 7 | Chromosome considered: 7 | Chromosome considered: 7 | ||||||
| Total mut: 472322 | Total mut: 7474645 | Total mut: 211857 | ||||||
| #AC | AG | AT | #AC | AG | AT | #AC | AG | AT |
| 37460 | 84882 | 28188 | 547435 | 1241532 | 421930 | 15688 | 35613 | 11956 |
| 7.93% | 17.97% | 5.97% | 7.32% | 16.61% | 5.64% | 7.40% | 16.81% | 5.64% |
| #CA | CG | CT | #CA | CG | CT | #CA | CG | CT |
| 13542 | 14761 | 58290 | 249357 | 248344 | 1024662 | 6912 | 6940 | 28744 |
| 2.87% | 3.13% | 12.34% | 3.34% | 3.32% | 13.71% | 3.26% | 3.28% | 13.57% |
| #GA | GC | GT | #GA | GC | GT | #GA | GC | GT |
| 57901 | 14630 | 14011 | 1026026 | 248139 | 250210 | 28433 | 6850 | 7094 |
| 12.26% | 3.10% | 2.97% | 13.73% | 3.32% | 3.35% | 13.42% | 3.23% | 3.35% |
| #TA | TC | TG | #TA | TC | TG | #TA | TC | TG |
| 27740 | 83951 | 36966 | 420944 | 1243830 | 552236 | 11933 | 35839 | 15855 |
| 5.87% | 17.77% | 7.83% | 5.63% | 16.64% | 7.39% | 5.63% | 16.92% | 7.48% |
| Total CpG mut: 55073 | Total CpG mut: 17214381 | Total CpG mut: 438261 | ||||||
| #CA | CG | CT (CpG) | #CA | CG | CT (CpG) | #CA | CG | CT (CpG) |
| 4726 | 4901 | 17826 | 1553055 | 1496647 | 5559223 | 39560 | 37816 | 141917 |
| 8.58% | 8.90% | 32.37% | 9.02% | 8.69% | 32.29% | 9.03% | 8.63% | 32.38% |
| #GA | GC | GT (CpG) | #GA | GC | GT (CpG) | #GA | GC | GT (CpG) |
| 17812 | 4938 | 4870 | 5540093 | 1500451 | 1564912 | 140912 | 38100 | 39956 |
| 32.34% | 8.97% | 8.84% | 32.18% | 8.72% | 9.09% | 32.15% | 8.69% | 9.12% |
| Chromosome considered: 8 | Chromosome considered: 8 | Chromosome considered: 8 | ||||||
| Total mut: 447494 | Total mut: 8329523 | Total mut: 232303 | ||||||
| #AC | AG | AT | #AC | AG | AT | #AC | AG | AT |
| 36470 | 80627 | 28019 | 612930 | 1389193 | 472481 | 17263 | 39130 | 13145 |
| 8.15% | 18.02% | 6.26% | 7.36% | 16.68% | 5.67% | 7.43% | 16.84% | 5.66% |
| #CA | CG | CT | #CA | CG | CT | #CA | CG | CT |
| 12873 | 12509 | 52977 | 275970 | 275240 | 1134734 | 7575 | 7606 | 31365 |
| 2.88% | 2.80% | 11.84% | 3.31% | 3.30% | 13.62% | 3.26% | 3.27% | 13.50% |
| #GA | GC | GT | #GA | GC | GT | #GA | GC | GT |
| 52553 | 12602 | 13076 | 1135625 | 274988 | 276918 | 31061 | 7471 | 7747 |
| 11.74% | 2.82% | 2.92% | 13.63% | 3.30% | 3.32% | 13.37% | 3.22% | 3.33% |
| #TA | TC | TG | #TA | TC | TG | #TA | TC | TG |
| 27899 | 81047 | 36842 | 471190 | 1392255 | 617999 | 13166 | 39359 | 17415 |
| 6.23% | 18.11% | 8.23% | 5.66% | 16.71% | 7.42% | 5.67% | 16.94% | 7.50% |
| Total CpG mut: 42812 | Total CpG mut: 19080000 | Total CpG mut: 482598 | ||||||
| #CA | CG | CT (CpG) | #CA | CG | CT (CpG) | #CA | CG | CT (CpG) |
| 3915 | 3624 | 13843 | 1722207 | 1658627 | 6160770 | 43591 | 41610 | 156128 |
| 9.14% | 8.46% | 32.33% | 9.03% | 8.69% | 32.29% | 9.03% | 8.62% | 32.35% |
| #GA | GC | GT (CpG) | #GA | GC | GT (CpG) | #GA | GC | GT (CpG) |
| 13740 | 3714 | 3976 | 6140462 | 1663184 | 1734750 | 155354 | 41958 | 43957 |
| 32.09% | 8.68% | 9.29% | 32.18% | 8.72% | 9.09% | 32.19% | 8.69% | 9.11% |
| Chromosome considered: 9 | Chromosome considered: 9 | Chromosome considered: 9 | ||||||
| Total mut: 458068 | Total mut: 9203601 | Total mut: 252598 | ||||||
| #AC | AG | AT | #AC | AG | AT | #AC | AG | AT |
| 37027 | 84339 | 27107 | 677909 | 1536992 | 522668 | 18786 | 42587 | 14275 |
| 8.08% | 18.41% | 5.92% | 7.37% | 16.70% | 5.68% | 7.44% | 16.86% | 5.65% |
| #CA | CG | CT | #CA | CG | CT | #CA | CG | CT |
| 12892 | 14167 | 53555 | 304153 | 303672 | 1251826 | 8179 | 8274 | 34124 |
| 2.81% | 3.09% | 11.69% | 3.30% | 3.30% | 13.60% | 3.24% | 3.28% | 13.51% |
| #GA | GC | GT | #GA | GC | GT | #GA | GC | GT |
| 54092 | 14174 | 13281 | 1252679 | 303504 | 305533 | 33753 | 8157 | 8440 |
| 11.81% | 3.09% | 2.90% | 13.61% | 3.30% | 3.32% | 13.36% | 3.23% | 3.34% |
| #TA | TC | TG | #TA | TC | TG | #TA | TC | TG |
| 27223 | 82656 | 37555 | 521314 | 1539861 | 683490 | 14327 | 42748 | 18948 |
| 5.94% | 18.04% | 8.20% | 5.66% | 16.73% | 7.43% | 5.67% | 16.92% | 7.50% |
| Total CpG mut: 48042 | Total CpG mut: 21160788 | Total CpG mut: 533924 | ||||||
| #CA | CG | CT (CpG) | #CA | CG | CT (CpG) | #CA | CG | CT (CpG) |
| 4296 | 4628 | 15177 | 1910506 | 1839464 | 6831658 | 48226 | 46009 | 172673 |
| 8.94% | 9.63% | 31.59% | 9.03% | 8.69% | 32.28% | 9.03% | 8.62% | 32.34% |
| #GA | GC | GT (CpG) | #GA | GC | GT (CpG) | #GA | GC | GT (CpG) |
| 15093 | 4510 | 4338 | 6810533 | 1844736 | 1923891 | 172020 | 46342 | 48654 |
| 31.42% | 9.39% | 9.03% | 32.18% | 8.72% | 9.09% | 32.22% | 8.68% | 9.11% |
| Chromosome considered: 10 | Chromosome considered: 10 | Chromosome considered: 10 | ||||||
| Total mut: 232099 | Total mut: 9643727 | Total mut: 262154 | ||||||
| #AC | AG | AT | #AC | AG | AT | #AC | AG | AT |
| 22448 | 43734 | 13416 | 710108 | 1609999 | 547300 | 19486 | 44230 | 14820 |
| 9.67% | 18.84% | 5.78% | 7.36% | 16.69% | 5.68% | 7.43% | 16.87% | 5.65% |
| #CA | CG | CT | #CA | CG | CT | #CA | CG | CT |
| 5982 | 7216 | 23502 | 318902 | 318342 | 1312403 | 8481 | 8598 | 35448 |
| 2.58% | 3.11% | 10.13% | 3.31% | 3.30% | 13.61% | 3.24% | 3.28% | 13.52% |
| #GA | GC | GT | #GA | GC | GT | #GA | GC | GT |
| 23246 | 7127 | 5972 | 1313255 | 318170 | 320345 | 35061 | 8493 | 8762 |
| 10.02% | 3.07% | 2.57% | 13.62% | 3.30% | 3.32% | 13.37% | 3.24% | 3.34% |
| #TA | TC | TG | #TA | TC | TG | #TA | TC | TG |
| 13124 | 43916 | 22416 | 546222 | 1612723 | 715958 | 14869 | 44272 | 19634 |
| 5.65% | 18.92% | 9.66% | 5.66% | 16.72% | 7.42% | 5.67% | 16.89% | 7.49% |
| Total CpG mut: 22334 | Total CpG mut: 22556113 | Total CpG mut: 563403 | ||||||
| #CA | CG | CT (CpG) | #CA | CG | CT (CpG) | #CA | CG | CT (CpG) |
| 1966 | 2283 | 6984 | 2036655 | 1960835 | 7282079 | 50855 | 48521 | 182311 |
| 8.80% | 10.22% | 31.27% | 9.03% | 8.69% | 32.28% | 9.03% | 8.61% | 32.36% |
| #GA | GC | GT (CpG) | #GA | GC | GT (CpG) | #GA | GC | GT (CpG) |
| 6861 | 2227 | 2013 | 7259576 | 1966488 | 2050480 | 181496 | 48816 | 51404 |
| 30.72% | 9.97% | 9.01% | 32.18% | 8.72% | 9.09% | 32.21% | 8.66% | 9.12% |
| Chromosome considered: 11 | Chromosome considered: 11 | Chromosome considered: 11 | ||||||
| Total mut: 204502 | Total mut: 10033716 | Total mut: 269186 | ||||||
| #AC | AG | AT | #AC | AG | AT | #AC | AG | AT |
| 18111 | 37573 | 12279 | 739903 | 1676888 | 570184 | 20001 | 45462 | 15240 |
| 8.86% | 18.37% | 6.00% | 7.37% | 16.71% | 5.68% | 7.43% | 16.89% | 5.66% |
| #CA | CG | CT | #CA | CG | CT | #CA | CG | CT |
| 5889 | 5777 | 22834 | 331461 | 330734 | 1362826 | 8707 | 8821 | 36385 |
| 2.88% | 2.82% | 11.17% | 3.30% | 3.30% | 13.58% | 3.23% | 3.28% | 13.52% |
| #GA | GC | GT | #GA | GC | GT | #GA | GC | GT |
| 22435 | 5829 | 5569 | 1363896 | 330611 | 332824 | 35979 | 8714 | 8996 |
| 10.97% | 2.85% | 2.72% | 13.59% | 3.30% | 3.32% | 13.37% | 3.24% | 3.34% |
| #TA | TC | TG | #TA | TC | TG | #TA | TC | TG |
| 12408 | 37588 | 18210 | 568986 | 1679730 | 745673 | 15302 | 45452 | 20127 |
| 6.07% | 18.38% | 8.90% | 5.67% | 16.74% | 7.43% | 5.68% | 16.88% | 7.48% |
| Total CpG mut: 18763 | Total CpG mut: 23884288 | Total CpG mut: 585601 | ||||||
| #CA | CG | CT (CpG) | #CA | CG | CT (CpG) | #CA | CG | CT (CpG) |
| 1840 | 1689 | 5923 | 2156021 | 2075920 | 7711645 | 52861 | 50454 | 189493 |
| 9.81% | 9.00% | 31.57% | 9.03% | 8.69% | 32.29% | 9.03% | 8.62% | 32.36% |
| #GA | GC | GT (CpG) | #GA | GC | GT (CpG) | #GA | GC | GT (CpG) |
| 5810 | 1693 | 1808 | 7687622 | 2081937 | 2171143 | 188582 | 50734 | 53477 |
| 30.97% | 9.02% | 9.64% | 32.19% | 8.72% | 9.09% | 32.20% | 8.66% | 9.13% |
| Chromosome considered: 12 | Chromosome considered: 12 | Chromosome considered: 12 | ||||||
| Total mut: 213568 | Total mut: 10432484 | Total mut: 279624 | ||||||
| #AC | AG | AT | #AC | AG | AT | #AC | AG | AT |
| 18882 | 40030 | 11324 | 767041 | 1738452 | 590683 | 20720 | 47062 | 15779 |
| 8.84% | 18.74% | 5.30% | 7.35% | 16.66% | 5.66% | 7.41% | 16.83% | 5.64% |
| #CA | CG | CT | #CA | CG | CT | #CA | CG | CT |
| 5413 | 7295 | 23824 | 346327 | 345336 | 1423513 | 9051 | 9191 | 37911 |
| 2.53% | 3.42% | 11.16% | 3.32% | 3.31% | 13.65% | 3.24% | 3.29% | 13.56% |
| #GA | GC | GT | #GA | GC | GT | #GA | GC | GT |
| 23869 | 7250 | 5300 | 1424422 | 345328 | 347599 | 37580 | 9097 | 9391 |
| 11.18% | 3.39% | 2.48% | 13.65% | 3.31% | 3.33% | 13.44% | 3.25% | 3.36% |
| #TA | TC | TG | #TA | TC | TG | #TA | TC | TG |
| 11231 | 40065 | 19085 | 589871 | 1741063 | 772849 | 15868 | 47109 | 20865 |
| 5.26% | 18.76% | 8.94% | 5.65% | 16.69% | 7.41% | 5.67% | 16.85% | 7.46% |
| Total CpG mut: 24797 | Total CpG mut: 25354894 | Total CpG mut: 621304 | ||||||
| #CA | CG | CT (CpG) | #CA | CG | CT (CpG) | #CA | CG | CT (CpG) |
| 2184 | 2538 | 7649 | 2289013 | 2203802 | 8186473 | 56060 | 53600 | 200984 |
| 8.81% | 10.24% | 30.85% | 9.03% | 8.69% | 32.29% | 9.02% | 8.63% | 32.35% |
| #GA | GC | GT (CpG) | #GA | GC | GT (CpG) | #GA | GC | GT (CpG) |
| 7691 | 2636 | 2099 | 8160950 | 2210062 | 2304594 | 200124 | 53821 | 56715 |
| 31.02% | 10.63% | 8.46% | 32.19% | 8.72% | 9.09% | 32.21% | 8.66% | 9.13% |
| Chromosome considered: 13 | Chromosome considered: 13 | Chromosome considered: 13 | ||||||
| Total mut: 613285 | Total mut: 11610874 | Total mut: 306903 | ||||||
| #AC | AG | AT | #AC | AG | AT | #AC | AG | AT |
| 41883 | 101996 | 38535 | 856202 | 1940617 | 659483 | 22840 | 51757 | 17440 |
| 6.83% | 16.63% | 6.28% | 7.37% | 16.71% | 5.68% | 7.44% | 16.86% | 5.68% |
| #CA | CG | CT | #CA | CG | CT | #CA | CG | CT |
| 21328 | 17581 | 85681 | 383429 | 382932 | 1576489 | 9904 | 10082 | 41490 |
| 3.48% | 2.87% | 13.97% | 3.30% | 3.30% | 13.58% | 3.23% | 3.29% | 13.52% |
| #GA | GC | GT | #GA | GC | GT | #GA | GC | GT |
| 85777 | 17710 | 21253 | 1578393 | 382530 | 384812 | 41121 | 9951 | 10260 |
| 13.99% | 2.89% | 3.47% | 13.59% | 3.29% | 3.31% | 13.40% | 3.24% | 3.34% |
| #TA | TC | TG | #TA | TC | TG | #TA | TC | TG |
| 39169 | 100415 | 41957 | 658668 | 1943983 | 863336 | 17487 | 51680 | 22891 |
| 6.39% | 16.37% | 6.84% | 5.67% | 16.74% | 7.44% | 5.70% | 16.84% | 7.46% |
| Total CpG mut: 76296 | Total CpG mut: 27779465 | Total CpG mut: 677116 | ||||||
| #CA | CG | CT (CpG) | #CA | CG | CT (CpG) | #CA | CG | CT (CpG) |
| 6993 | 5827 | 25296 | 2507935 | 2415278 | 8967701 | 61136 | 58418 | 219000 |
| 9.17% | 7.64% | 33.16% | 9.03% | 8.69% | 32.28% | 9.03% | 8.63% | 32.34% |
| #GA | GC | GT (CpG) | #GA | GC | GT (CpG) | #GA | GC | GT (CpG) |
| 25152 | 5918 | 7110 | 8942297 | 2420972 | 2525282 | 218111 | 58747 | 61704 |
| 32.97% | 7.76% | 9.32% | 32.19% | 8.71% | 9.09% | 32.21% | 8.68% | 9.11% |
| Chromosome considered: 14 | Chromosome considered: 14 | Chromosome considered: 14 | ||||||
| Total mut: 409379 | Total mut: 12394286 | Total mut: 324754 | ||||||
| #AC | AG | AT | #AC | AG | AT | #AC | AG | AT |
| 31775 | 70825 | 23678 | 913116 | 2068648 | 702906 | 24175 | 54643 | 18420 |
| 7.76% | 17.30% | 5.78% | 7.37% | 16.69% | 5.67% | 7.44% | 16.83% | 5.67% |
| #CA | CG | CT | #CA | CG | CT | #CA | CG | CT |
| 12705 | 13297 | 53125 | 410012 | 409703 | 1686340 | 10513 | 10671 | 43935 |
| 3.10% | 3.25% | 12.98% | 3.31% | 3.31% | 13.61% | 3.24% | 3.29% | 13.53% |
| #GA | GC | GT | #GA | GC | GT | #GA | GC | GT |
| 52979 | 13080 | 12885 | 1688108 | 408829 | 411856 | 43517 | 10642 | 10861 |
| 12.94% | 3.20% | 3.15% | 13.62% | 3.30% | 3.32% | 13.40% | 3.28% | 3.34% |
| #TA | TC | TG | #TA | TC | TG | #TA | TC | TG |
| 23322 | 70102 | 31606 | 701933 | 2072564 | 920271 | 18510 | 54625 | 24242 |
| 5.70% | 17.12% | 7.72% | 5.66% | 16.72% | 7.42% | 5.70% | 16.82% | 7.46% |
| Total CpG mut: 58110 | Total CpG mut: 30033555 | Total CpG mut: 726612 | ||||||
| #CA | CG | CT (CpG) | #CA | CG | CT (CpG) | #CA | CG | CT (CpG) |
| 5214 | 5065 | 18728 | 2711438 | 2611095 | 9695341 | 65560 | 62741 | 234863 |
| 8.97% | 8.72% | 32.23% | 9.03% | 8.69% | 32.28% | 9.02% | 8.63% | 32.32% |
| #GA | GC | GT (CpG) | #GA | GC | GT (CpG) | #GA | GC | GT (CpG) |
| 18866 | 5100 | 5137 | 9668293 | 2617471 | 2729917 | 234168 | 63172 | 66108 |
| 32.47% | 8.78% | 8.84% | 32.19% | 8.72% | 9.09% | 32.23% | 8.69% | 9.10% |
| Chromosome considered: 15 | Chromosome considered: 15 | Chromosome considered: 15 | ||||||
| Total mut: 500470 | Total mut: 13352389 | Total mut: 353573 | ||||||
| #AC | AG | AT | #AC | AG | AT | #AC | AG | AT |
| 34365 | 84799 | 32724 | 986257 | 2233774 | 758746 | 26393 | 59811 | 20223 |
| 6.87% | 16.94% | 6.54% | 7.39% | 16.73% | 5.68% | 7.46% | 16.92% | 5.72% |
| #CA | CG | CT | #CA | CG | CT | #CA | CG | CT |
| 17247 | 13195 | 68269 | 439944 | 439765 | 1810550 | 11345 | 11552 | 47581 |
| 3.45% | 2.64% | 13.64% | 3.29% | 3.29% | 13.56% | 3.21% | 3.27% | 13.46% |
| #GA | GC | GT | #GA | GC | GT | #GA | GC | GT |
| 68333 | 13299 | 16926 | 1812495 | 439071 | 442118 | 47127 | 11522 | 11673 |
| 13.65% | 2.66% | 3.38% | 13.57% | 3.29% | 3.31% | 13.33% | 3.26% | 3.30% |
| #TA | TC | TG | #TA | TC | TG | #TA | TC | TG |
| 32406 | 84222 | 34685 | 757897 | 2238264 | 993508 | 20222 | 59658 | 26466 |
| 6.48% | 16.83% | 6.93% | 5.68% | 16.76% | 7.44% | 5.72% | 16.87% | 7.49% |
| Total CpG mut: 55272 | Total CpG mut: 31676668 | Total CpG mut: 768482 | ||||||
| #CA | CG | CT (CpG) | #CA | CG | CT (CpG) | #CA | CG | CT (CpG) |
| 5246 | 3997 | 18313 | 2860365 | 2753903 | 10225091 | 69260 | 66448 | 248354 |
| 9.49% | 7.23% | 33.13% | 9.03% | 8.69% | 32.28% | 9.01% | 8.65% | 32.32% |
| #GA | GC | GT (CpG) | #GA | GC | GT (CpG) | #GA | GC | GT (CpG) |
| 18278 | 4066 | 5372 | 10197615 | 2760166 | 2879528 | 247678 | 66793 | 69949 |
| 33.07% | 7.36% | 9.72% | 32.19% | 8.71% | 9.09% | 32.23% | 8.69% | 9.10% |
| Chromosome considered: 16 | Chromosome considered: 16 | Chromosome considered: 16 | ||||||
| Total mut: 286393 | Total mut: 13899900 | Total mut: 367830 | ||||||
| #AC | AG | AT | #AC | AG | AT | #AC | AG | AT |
| 21826 | 51047 | 18333 | 1028192 | 2328106 | 790678 | 27499 | 62298 | 21064 |
| 7.62% | 17.82% | 6.40% | 7.40% | 16.75% | 5.69% | 7.48% | 16.94% | 5.73% |
| #CA | CG | CT | #CA | CG | CT | #CA | CG | CT |
| 8689 | 8734 | 34595 | 457340 | 457198 | 1882300 | 11814 | 12006 | 49383 |
| 3.03% | 3.05% | 12.08% | 3.29% | 3.29% | 13.54% | 3.21% | 3.26% | 13.43% |
| #GA | GC | GT | #GA | GC | GT | #GA | GC | GT |
| 34591 | 8707 | 8596 | 1883540 | 456351 | 459401 | 48900 | 11957 | 12158 |
| 12.08% | 3.04% | 3.00% | 13.55% | 3.28% | 3.31% | 13.29% | 3.25% | 3.31% |
| #TA | TC | TG | #TA | TC | TG | #TA | TC | TG |
| 17980 | 51279 | 22016 | 789751 | 2331868 | 1035175 | 21083 | 62122 | 27546 |
| 6.28% | 17.91% | 7.69% | 5.68% | 16.78% | 7.45% | 5.73% | 16.89% | 7.49% |
| Total CpG mut: 31548 | Total CpG mut: 32776278 | Total CpG mut: 796305 | ||||||
| #CA | CG | CT (CpG) | #CA | CG | CT (CpG) | #CA | CG | CT (CpG) |
| 2878 | 2726 | 9968 | 2960455 | 2849947 | 10579279 | 71814 | 68840 | 257359 |
| 9.12% | 8.64% | 31.60% | 9.03% | 8.70% | 32.28% | 9.02% | 8.64% | 32.32% |
| #GA | GC | GT (CpG) | #GA | GC | GT (CpG) | #GA | GC | GT (CpG) |
| 10227 | 2905 | 2844 | 10551320 | 2856137 | 2979140 | 256660 | 69139 | 72493 |
| 32.42% | 9.21% | 9.01% | 32.19% | 8.71% | 9.09% | 32.23% | 8.68% | 9.10% |
| Chromosome considered: 17 | Chromosome considered: 17 | Chromosome considered: 17 | ||||||
| Total mut: 51892 | Total mut: 13997627 | Total mut: 368429 | ||||||
| #AC | AG | AT | #AC | AG | AT | #AC | AG | AT |
| 3913 | 9348 | 3200 | 1035125 | 2343916 | 795878 | 27543 | 62388 | 21092 |
| 7.54% | 18.01% | 6.17% | 7.40% | 16.75% | 5.69% | 7.48% | 16.93% | 5.72% |
| #CA | CG | CT | #CA | CG | CT | #CA | CG | CT |
| 1598 | 1668 | 6310 | 460779 | 460727 | 1896525 | 11835 | 12033 | 49477 |
| 3.08% | 3.21% | 12.16% | 3.29% | 3.29% | 13.55% | 3.21% | 3.27% | 13.43% |
| #GA | GC | GT | #GA | GC | GT | #GA | GC | GT |
| 6389 | 1649 | 1784 | 1897540 | 459756 | 462824 | 48985 | 11973 | 12181 |
| 12.31% | 3.18% | 3.44% | 13.56% | 3.28% | 3.31% | 13.30% | 3.25% | 3.31% |
| #TA | TC | TG | #TA | TC | TG | #TA | TC | TG |
| 3141 | 8904 | 3988 | 795115 | 2347344 | 1042098 | 21130 | 62212 | 27580 |
| 6.05% | 17.16% | 7.69% | 5.68% | 16.77% | 7.44% | 5.74% | 16.89% | 7.49% |
| Total CpG mut: 6909 | Total CpG mut: 34125498 | Total CpG mut: 803387 | ||||||
| #CA | CG | CT (CpG) | #CA | CG | CT (CpG) | #CA | CG | CT (CpG) |
| 611 | 605 | 2178 | 3081749 | 2966704 | 11015473 | 72462 | 69426 | 259615 |
| 8.84% | 8.76% | 31.52% | 9.03% | 8.69% | 32.28% | 9.02% | 8.64% | 32.32% |
| #GA | GC | GT (CpG) | #GA | GC | GT (CpG) | #GA | GC | GT (CpG) |
| 2168 | 667 | 680 | 10985792 | 2973808 | 3101972 | 258985 | 69756 | 73143 |
| 31.38% | 9.65% | 9.84% | 32.19% | 8.71% | 9.09% | 32.24% | 8.68% | 9.10% |
| Chromosome considered: 18 | Chromosome considered: 18 | Chromosome considered: 18 | ||||||
| Total mut: 210913 | Total mut: 14396631 | Total mut: 379218 | ||||||
| #AC | AG | AT | #AC | AG | AT | #AC | AG | AT |
| 18674 | 40528 | 12451 | 1064197 | 2409818 | 818261 | 28332 | 64234 | 21668 |
| 8.85% | 19.22% | 5.90% | 7.39% | 16.74% | 5.68% | 7.47% | 16.94% | 5.71% |
| #CA | CG | CT | #CA | CG | CT | #CA | CG | CT |
| 5284 | 6473 | 22269 | 474241 | 474501 | 1951923 | 12202 | 12394 | 50976 |
| 2.51% | 3.07% | 10.56% | 3.29% | 3.30% | 13.56% | 3.22% | 3.27% | 13.44% |
| #GA | GC | GT | #GA | GC | GT | #GA | GC | GT |
| 21892 | 6380 | 5285 | 1952499 | 473175 | 476406 | 50442 | 12321 | 12511 |
| 10.38% | 3.02% | 2.51% | 13.56% | 3.29% | 3.31% | 13.30% | 3.25% | 3.30% |
| #TA | TC | TG | #TA | TC | TG | #TA | TC | TG |
| 12370 | 40717 | 18590 | 817313 | 2413006 | 1071291 | 21717 | 64042 | 28379 |
| 5.86% | 19.31% | 8.81% | 5.68% | 16.76% | 7.44% | 5.73% | 16.89% | 7.48% |
| Total CpG mut: 20470 | Total CpG mut: 35213301 | Total CpG mut: 829312 | ||||||
| #CA | CG | CT (CpG) | #CA | CG | CT (CpG) | #CA | CG | CT (CpG) |
| 1801 | 2170 | 6332 | 3180103 | 3060920 | 11366705 | 74783 | 71678 | 267976 |
| 8.80% | 10.60% | 30.93% | 9.03% | 8.69% | 32.28% | 9.02% | 8.64% | 32.31% |
| #GA | GC | GT (CpG) | #GA | GC | GT (CpG) | #GA | GC | GT (CpG) |
| 6249 | 2096 | 1822 | 11336182 | 3068779 | 3200612 | 267342 | 72044 | 75489 |
| 30.53% | 10.24% | 8.90% | 32.19% | 8.71% | 9.09% | 32.24% | 8.69% | 9.10% |
| Chromosome considered: X | Chromosome considered: X | Chromosome considered: X | ||||||
| Total mut: 291732 | Total mut: 14953208 | Total mut: 389540 | ||||||
| #AC | AG | AT | #AC | AG | AT | #AC | AG | AT |
| 21970 | 51186 | 17872 | 1106310 | 2505154 | 850800 | 29105 | 65921 | 22263 |
| 7.53% | 17.55% | 6.13% | 7.40% | 16.75% | 5.69% | 7.47% | 16.92% | 5.72% |
| #CA | CG | CT | #CA | CG | CT | #CA | CG | CT |
| 9553 | 9043 | 36312 | 491949 | 492157 | 2024859 | 12539 | 12714 | 52355 |
| 3.27% | 3.10% | 12.45% | 3.29% | 3.29% | 13.54% | 3.22% | 3.26% | 13.44% |
| #GA | GC | GT | #GA | GC | GT | #GA | GC | GT |
| 36349 | 8838 | 9273 | 2025726 | 490965 | 494054 | 51805 | 12661 | 12845 |
| 12.46% | 3.03% | 3.18% | 13.55% | 3.28% | 3.30% | 13.30% | 3.25% | 3.30% |
| #TA | TC | TG | #TA | TC | TG | #TA | TC | TG |
| 17888 | 51843 | 21605 | 849626 | 2508378 | 1113230 | 22320 | 65854 | 29158 |
| 6.13% | 17.77% | 7.41% | 5.68% | 16.77% | 7.44% | 5.73% | 16.91% | 7.49% |
| Total CpG mut: 30513 | Total CpG mut: 36800180 | Total CpG mut: 857480 | ||||||
| #CA | CG | CT (CpG) | #CA | CG | CT (CpG) | #CA | CG | CT (CpG) |
| 2808 | 2515 | 9897 | 3322848 | 3199002 | 11878914 | 77372 | 74130 | 276981 |
| 9.20% | 8.24% | 32.44% | 9.03% | 8.69% | 32.28% | 9.02% | 8.65% | 32.30% |
| #GA | GC | GT (CpG) | #GA | GC | GT (CpG) | #GA | GC | GT (CpG) |
| 9887 | 2543 | 2863 | 11847080 | 3207483 | 3344853 | 276465 | 74515 | 78017 |
| 32.40% | 8.33% | 9.38% | 32.19% | 8.72% | 9.09% | 32.24% | 8.69% | 9.10% |